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Onyango MG, Bialosuknia SM, Payne AF, Mathias N, Kuo L, Vigneron A, DeGennaro M, Ciota AT, Kramer LD. (2020). Increased temperatures reduce the vectorial capacity of Aedes mosquitoes for Zika virus. Emerg Microbes Infect. 9(1):67-77. doi: 10.1080/22221751.2019.1707125. PubMed PMID: 31894724.
Castellanos A, Hernandez MG, Tomic-Canic M, Jozic I, Fernandez-Lima F. (2020). Multimodal, in Situ Imaging of Ex Vivo Human Skin Reveals Decrease of Cholesterol Sulfate in the Neoepithelium during Acute Wound Healing. Anal Chem. 92(1):1386-1394. doi: 10.1021/acs.analchem.9b04542. Epub 2019 Dec 17. PubMed PMID: 31789498.
Jiang Z, Lai Y, Beaver JM, Tsegay PS, Zhao ML, Horton JK, Zamora M, Rein HL, Miralles F, Shaver M, Hutcheson JD, Agoulnik I, Wilson SH, Liu Y. (2020). Oxidative DNA Damage Modulates DNA Methylation Pattern in Human Breast Cancer 1 (BRCA1) Gene via the Crosstalk between DNA Polymerase β and a de novo DNA Methyltransferase. Cells. 9(1). pii: E225. doi: 10.3390/cells9010225. PubMed PMID: 31963223.
Kim IH, Castillo JC, Aryan A, Martin-Martin I, Nouzova M, Noriega FG, Barletta ABF, Calvo E, Adelman ZN, Ribeiro JMC, Andersen JF. (2020). A mosquito juvenile hormone binding protein (mJHBP) regulates the activation of innate immune defenses and hemocyte development. PLoS Pathog. 16(1):e1008288. doi: 10.1371/journal.ppat.1008288. [Epub ahead of print] PubMed PMID: 31961911.
Villalobos-Sambucaro MJ, Nouzova M, Ramirez CE, Eugenia Alzugaray M, Fernandez-Lima F, Ronderos JR, Noriega FG. (2020). The juvenile hormone described in Rhodnius prolixus by Wigglesworth is juvenile hormone III skipped bisepoxide. Sci Rep. 10(1):3091. doi: 10.1038/s41598-020-59495-1. PubMed PMID: 32080221.
Beebe SJ, Celestine MJ, Bullock JL, Sandhaus S, Arca JF, Cropek DM, Ludvig TA, Foster SR, Clark JS, Beckford FA, Tano CM, Tonsel-White EA, Gurung RK, Stankavich CE, Tse-Dinh YC, Jarrett WL, Holder AA. (2020). Synthesis, characterization, DNA binding, topoisomerase inhibition, and apoptosis induction studies of a novel cobalt(III) complex with a thiosemicarbazone ligand. J Inorg Biochem. 203:110907.
Tiwari PB, Chapagain PP, Seddek A, Annamalai T, Üren A, Tse-Dinh YC. (2020). Covalent Complex of DNA and Bacterial Topoisomerase: Implications in Antibacterial Drug Development. ChemMedChem. doi: 10.1002/cmdc.201900721. [Epub ahead of print] PubMed PMID: 32043806.
Zhang M, Lai Y, Vasquez JL, James DI, Smith KM, Waddell ID, Ogilvie DJ, Liu Y, Agoulnik IU. (2020). Androgen Receptor and Poly(ADP-ribose) Glycohydrolase Inhibition Increases Efficiency of Androgen Ablation in Prostate Cancer Cells. Sci Rep. 10(1):3836. doi: 10.1038/s41598-020-60849-y. PubMed PMID: 32123273; PubMed Central PMCID: PMC7052214.
Dages S, Zhi X, Leng F. (2020). Fis protein forms DNA topological barriers to confine transcription-coupled DNA supercoiling in Escherichia coli. FEBS Lett. 594(5):791-798. doi: 10.1002/1873-3468.13643. Epub 2019 Nov 14. PubMed PMID: 31639222.
Barredo E, DeGennaro M. (2020). Not Just from Blood: Mosquito Nutrient Acquisitionfrom Nectar Sources. Trends Parasitol. 36(5):473-484. doi: 10.1016/j.pt.2020.02.003. Epub 2020 Mar 17. Review. PubMed PMID: 32298634.
Chaparro D, Dargam V, Alvarez P, Yeung J, Saytashev I, Bustillo J, Loganathan A, Ramella-Roman J, Agarwal A, Hutcheson J. (2020). A Method to Quantify Tensile Biaxial Properties of Mouse Aortic Valve Leaflets. J Biomech Eng. doi: 10.1115/1.4046921. [Epub ahead of print] PubMed PMID: 32291440.
Nunez-Castilla J, Rahaman J, Ahrens JB, Balbin CA, Siltberg-Liberles J. (2020). Exploring Evolutionary Constraints in the Proteomes of Zika, Dengue, and Other Flaviviruses to Find Fitness-Critical Sites. J Mol Evol. 88(4):399-414. doi: 10.1007/s00239-020-09941-5. Epub 2020 Apr 7. PubMed PMID: 32266427.
Ceyhan Y, Zhang M, Guo J, Sandoval CG, Vacher J, Kaftanovskaya EM, Agoulnik AI, Agoulnik IU. (2020). Deletion of inositol polyphosphate 4-phosphatase type-II B affects spermatogenesis in mice. PLoS One. 15(5):e0233163. doi: 10.1371/journal.pone.0233163. PMID: 32413098.
Baral P, Pavadai E, Gerstman BS, Chapagain PP. (2020). In-silico identification of the vaccine candidate epitopes against the Lassa virus hemorrhagic fever. Sci Rep. 10(1):7667. doi: 10.1038/s41598-020-63640-1. PMID: 32376973; PMCID: PMC7203123.
Cao N, Tan K, Zuo X, Annamalai T, Tse-Dinh YC. (2020). Mechanistic insights from structure of Mycobacterium smegmatis topoisomerase I with ssDNA bound to both N- and C-terminal domains. Nucleic Acids Res. 48(8):4448‐4462. doi:10.1093/nar/gkaa201. PMID: 32232337 PMCID: PMC7192597.
Li X, Karras P, Torres R, Rambow F, van den Oord J, Marine JC, Kos L. (2020). Disseminated Melanoma Cells Transdifferentiate into Endothelial Cells in Intravascular Niches at Metastatic Sites. Cell Rep. 31(11):107765. doi: 10.1016/j.celrep.2020.107765. PMID: 32553158.
Guo J, Sesena Rubfiaro A, Lai Y, Moscoso J, Chen F, Liu Y, Wang X, He J. (2020). Dynamic single-cell intracellular pH sensing using a SERS-active nanopipette. Analyst. doi: 10.1039/d0an00838a. Epub ahead of print. PMID: 32542257.
Pokhrel R, Chapagain P, Siltberg-Liberles J. (2020 ). Potential RNA-dependent RNA polymerase inhibitors as prospective therapeutics against SARS-CoV-2. J Med Microbiol. 69(6):864-873. doi:10.1099/jmm.0.001203
Su L, Deng Z, Leng F. (2020). The Mammalian High Mobility Group Protein AT-Hook 2 (HMGA2): Biochemical and Biophysical Properties, and Its Association with Adipogenesis. Int J Mol Sci. 21(10):3710. doi: 10.3390/ijms21103710. PMID: 32466162; PMCID: PMC7279267.
Pandey P, Ghimire G, Garcia J, Rubfiaro A, Wang X, Tomitaka A, Nair M, Kaushik A, He J. (2020). Single-Entity Approach to Investigate Surface Charge Enhancement in Magnetoelectric Nanoparticles Induced by AC Magnetic Field Stimulation. ACS Sens. doi: 10.1021/acssensors.0c00664. Epub ahead of print. PMID: 32449356.
Zhao T, Sun D, Zhao M, Lai Y, Liu Y, Zhang Z. (2020). N6-methyladenosine mediates arsenite-induced human keratinocyte transformation by suppressing p53 activation. Environ Pollut. 259:113908. doi: 10.1016/j.envpol.2019.113908. Epub 2020 Jan 7. PMID: 31931413; PMCID: PMC7082205.
Nunez-Castilla J, Siltberg-Liberles J. (2020). An Easy Protocol for Evolutionary Analysis of Intrinsically Disordered Proteins. Methods Mol Biol. 2141:147-177. doi: 10.1007/978-1-0716-0524-0_7. PMID: 32696356.
Mathivathanan L, Rogez G, Ben Amor N, Robert V, Raptis RG, Boudalis AK. (2020). Origin of Ferromagnetism and Magnetic Anisotropy in a Family of Copper(II) Triangles. Chemistry. doi: 10.1002/chem.202001028. Epub ahead of print. PMID: 32343007.
Niu G, Hao Y, Wang X, Gao JM, Li J. (2020). Fungal Metabolite Asperaculane B Inhibits Malaria Infection and Transmission. Molecules. 25(13):E3018. doi: 10.3390/molecules25133018. PMID: 32630339.
Jeanne Dit Fouque K, Fernandez-Lima F. (2020). Following Structural Changes by Thermal Denaturation Using Trapped Ion Mobility Spectrometry-Mass Spectrometry. J Phys Chem B. 124(29):6257-6265. doi: 10.1021/acs.jpcb.0c04276. Epub 2020 Jul 14. PMID: 32560586.
Esteban-Lopez M, Agoulnik AI. (2020). Diverse functions of insulin-like 3 peptide. J Endocrinol. 247(1):R1-R12. doi: 10.1530/JOE-20-0168. PMID: 32813485.
Ai Q, Zhou J, Guo J, Pandey P, Liu S, Fu Q, Liu Y, Deng C, Chang S, Liang F, He J. (2020). Observing dynamic molecular changes at single-molecule level in a cucurbituril based plasmonic molecular junction. Nanoscale. 12(32):17103-17112. doi: 10.1039/d0nr03360j. PMID: 32785409.
Ramelow J, Brooks CD, Gao L, Almiman AA, Williams TM, Villalona-Calero MA, Duan W. (2020). The oncogenic potential of a mutant TP53 gene explored in two spontaneous lung cancer mice models. BMC Cancer. 20(1):738. doi: 10.1186/s12885-020-07212-6. PMID: 32770960; PMCID: PMC7414707.
Burke SL, Cobb J, Agarwal R, Maddux M, Cooke MS. (2020). How Robust is the Evidence for a Role of Oxidative Stress in Autism Spectrum Disorders and Intellectual Disabilities? J Autism Dev Disord. doi: 10.1007/s10803-020-04611-3. Epub ahead of print. PMID: 32929662.
Cui Y, Niu G, Li VL, Wang X, Li J. (2020). Analysis of blood-induced Anopheles gambiae midgut proteins and sexual stage Plasmodium falciparum interaction reveals mosquito genes important for malaria transmission. Sci Rep. 10(1):14316. doi: 10.1038/s41598-020-71186-5. PMID: 32868841; PMCID: PMC7459308.
Zhang W, Veisaga ML, Barbieri MA. (2020). Role of RIN1 on telomerase activity driven by EGF-Ras mediated signaling in breast cancer. Exp Cell Res. 112318. doi: 10.1016/j.yexcr.2020.112318. Epub ahead of print. PMID: 33069695.
Chen F, Panday N, Li X, Ma T, Guo J, Wang X, Kos L, Hu K, Gu N, He J. (2020). Simultaneous mapping of nanoscale topography and surface potential of charged surfaces by scanning ion conductance microscopy. Nanoscale. doi: 10.1039/d0nr04555a. Epub ahead of print. PMID: 33030171.
Lai Y, Beaver JM, Laverde E, Liu Y. (2020). Trinucleotide repeat instability via DNA base excision repair. DNA Repair (Amst). 93:102912. doi: 10.1016/j.dnarep.2020.102912. PMID: 33087278.
Dasgupta T, Ferdous S, Tse-Dinh YC. (2020). Mechanism of Type IA Topoisomerases. Molecules. 25(20):E4769. doi: 10.3390/molecules25204769. PMID: 33080770.
Porter, J, Jeanne Dit Fouque K, Miksovska J, Fernandez-Lima, F. (2020). Salt bridges govern the structural heterogeneity of heme protein interactions and porphyrin networks: microperoxidase-11. RSC Adv., Issue 56. 10, 33861-33867.
Ramos FO, Leyria J, Nouzova M, Fruttero LL, Noriega FG, Canavoso LE. (2020). Juvenile hormone mediates lipid storage in the oocytes of Dipetalogaster maxima. Insect Biochem Mol Biol. 103499. doi: 10.1016/j.ibmb.2020.103499. Epub ahead of print. PMID: 33212190.
Su L, Bryan N, Battista S, Freitas J, Garabedian A, D'Alessio F, Romano M, Falanga F, Fusco A, Kos L, Chambers J, Fernandez-Lima F, Chapagain PP, Vasile S, Smith L, Leng F. (2020). Identification of HMGA2 inhibitors by AlphaScreen-based ultra-high-throughput screening assays. Sci Rep. 10(1):18850. doi: 10.1038/s41598-020-75890-0. PMID: 33139812; PMCID: PMC7606612.
Ahrens JB, Teufel AI, Siltberg-Liberles J. (2020). A Phylogenetic Rate Parameter Indicates Different Sequence Divergence Patterns in Orthologs and Paralogs. J Mol Evol. doi: 10.1007/s00239-020-09969-7. Epub ahead of print. PMID: 33118098.
Beddingfield BJ, Iwanaga N, Chapagain PP, Zheng W, Roy CJ, Hu TY, Kolls JK, Bix GJ. (2020). The Integrin Binding Peptide, ATN-161, as a Novel Therapy for SARS-CoV-2 Infection. JACC Basic Transl Sci. doi: 10.1016/j.jacbts.2020.10.003. Epub ahead of print. PMID: 33102950; PMCID: PMC7566794.
Noriega FG, Nouzova M. (2020). Approaches and Tools to Study the Roles of Juvenile Hormones in Controlling Insect Biology. Insects. 11(12):E858. doi: 10.3390/insects11120858. PMID: 33287115.
Christensen S, Serbus LR. (2020). Gene Transfer Agents in Symbiotic Microbes. Results Probl Cell Differ. 69:25-76. doi: 10.1007/978-3-030-51849-3_2. PMID: 33263868.
Momtaz AZ, Ahumada Sabagh AD, Gonzalez Amortegui JG, Salazar SA, Finessi A, Hernandez J, Christensen S, Serbus LR. (2020). A Role for Maternal Factors in Suppressing Cytoplasmic Incompatibility. Front Microbiol. 11:576844. doi: 10.3389/fmicb.2020.576844. PMID: 33240234; PMCID: PMC7680759.
Niu G, Annamalai T, Wang X, Li S, Munga S, Niu G, Tse-Dinh YC, Li J. (2020). A diverse global fungal library for drug discovery. PeerJ. 8:e10392. doi: 10.7717/peerj.10392. PMID: 33312768; PMCID: PMC7703384.
- 2019
Shih YM, Cooke MS, Pan CH, Chao MR, Hu CW. (2019). Clinical relevance of guanine-derived urinary biomarkers of oxidative stress, determined by LC-MS/MS. Redox Biol. 20:556-565. doi: 10.1016/j.redox.2018.11.016. Epub 2018 Nov 26. PubMed PMID: 30508700; PubMed Central PMCID: PMC6279954.
Jeanne Dit Fouque K, Bisram V, Hegemann JD, Zirah S, Rebuffat S, Fernandez-Lima F. (2019). Structural signatures of the class III lasso peptide BI-32169 and the branched-cyclic topoisomers using trapped ion mobility spectrometry-mass spectrometry and tandem mass spectrometry. Anal Bioanal Chem. doi:10.1007/s00216-019-01613-8. [Epub ahead of print] PubMed PMID: 30707269.
Hernández-Martínez S, Cardoso-Jaime V, Nouzova M, Michalkova V, Ramirez CE, Fernandez-Lima F, Noriega FG. (2019). Juvenile hormone controls ovarian development in female Anopheles albimanus mosquitoes. Sci Rep. 9(1):2127. doi: 10.1038/s41598-019-38631-6. PubMed PMID: 30765796; PubMed Central PMCID: PMC6375968.
Garcia PK, Annamalai T, Wang W, Bell RS, Le D, Martin Pancorbo P, Sikandar S, Seddek A, Yu X, Sun D, Uhlemann AC, Tiwari PB, Leng F, Tse-Dinh YC. (2019). Mechanism and resistance for antimycobacterial activity of a fluoroquinophenoxazine compound. PLoS One. 14(2):e0207733. doi: 10.1371/journal.pone.0207733. eCollection 2019. PubMed PMID: 30794538.
Jeanne Dit Fouque K, Garabedian A, Leng F, Tse-Dinh YC, Fernandez-Lima F. (2019). Microheterogeneity of Topoisomerase IA/IB and Their DNA-Bound States. ACS Omega, 2019, 4 (2), pp 3619–3626. DOI: 10.1021/acsomega.8b02887.
Pokhrel R, Pavadai E, Gerstman BS, Chapagain PP. (2019). Membrane pore formation and ion selectivity of the Ebola virus delta peptide. Phys Chem Chem Phys. doi: 10.1039/c8cp07323f. [Epub ahead of print] PubMed PMID: 30785432.
Tangar A, Derrien V, Lei R, Santiago Estevez MJ, Sebban P, Bernad S, Miksovska J. (2019). Utility of fluorescent heme analogue ZnPPIX to monitor conformational heterogeneity in vertebrate hexa-coordinated globins. Metallomics. doi: 10.1039/c8mt00332g. [Epub ahead of print] PubMed PMID: 30734813.
Oranzi NR, Kemperman RHJ, Wei MS, Petkovska VI, Granato SW, Rochon B, Kaszycki J, La Rotta A, Jeanne Dit Fouque K, Fernandez-Lima F, Yost RA. (2019). Measuring the Integrity of Gas-Phase Conformers of Sodiated 25-Hydroxyvitamin D3 by Drift Tube, Traveling Wave, Trapped, and High-Field Asymmetric Ion Mobility. Anal Chem. doi: 10.1021/acs.analchem.8b05723. [Epub ahead of print] PubMed PMID: 30807105.
Masi A, Sabbia A, Ferreri C, Manoli F, Lai Y, Laverde E, Liu Y, Krokidis MG, Chatgilialoglu C, Faraone Mennella MR. (2019). Diastereomeric Recognition of 5',8-cyclo-2'-Deoxyadenosine Lesions by Human Poly(ADP-ribose) Polymerase 1 in a Biomimetic Model. Cells. 8(2). pii: E116. doi: 10.3390/cells8020116. PubMed PMID: 30717407.
Butcher D, Miksovska J, Ridgeway ME, Park MA, Fernandez-Lima F. (2019). The effects of solution additives and gas-phase modifiers on the molecular environment and conformational space of common heme proteins. Rapid Commun Mass Spectrom. 33(5):399-404. doi: 10.1002/rcm.8347. PubMed PMID: 30421840.
Raji JI, Melo N, Castillo JS, Gonzalez S, Saldana V, Stensmyr MC, DeGennaro M. (2019). Aedes aegypti Mosquitoes Detect Acidic Volatiles Found in Human Odor Using the IR8a Pathway. Curr Biol. pii: S0960-9822(19)30215-5. doi:10.1016/j.cub.2019.02.045. [Epub ahead of print] PubMed PMID: 30930038.
Lugo-Martinez J, Ruiz-Perez D, Narasimhan G, Bar-Joseph Z. (2019). Dynamic interaction network inference from longitudinal microbiome data. Microbiome. 7(1):54. doi: 10.1186/s40168-019-0660-3. PubMed PMID: 30940197; PubMed Central PMCID: PMC6446388.
Bhushan P, Umasankar Y, Hutcheson JD, Bhansali S. (2019). Toxicity assessment of wearable wound sensor constituents on keratinocytes. Toxicol In Vitro. 58:170-177. doi: 10.1016/j.tiv.2019.03.034. [Epub ahead of print] PubMed PMID: 30928693.
Lazarou KA, González-Nieves K, Chakraborty I, Raptis RG. (2019). Spontaneous Resolution by Crystallization of an Octanuclear Iron(III) Complex Using Only Racemic Reagents. Angew Chem Int Ed Engl. doi:10.1002/anie.201901877. [Epub ahead of print] PubMed PMID: 30891840.
Duan W, Gao L, Kalvala A, Aguila B, Brooks C, Mo X, Ding H, Shilo K, Otterson GA, Villalona-Calero MA. (2019). Type of TP53 mutation influences oncogenic potential and spectrum of associated K-ras mutations in lung-specific transgenic mice. Int J Cancer. doi: 10.1002/ijc.32279. [Epub ahead of print] PubMed PMID: 30873587.
Lucero M, Suarez AE, Chambers JW. (2019). Phosphoregulation on mitochondria: Integration of cell and organelle responses. CNS Neurosci Ther. doi: 10.1111/cns.13141. [Epub ahead of print] Review. PubMed PMID: 31025544.
Jia Y, Karbaschia M, Cooke M. (2019). Mycoplasma infection of cultured cells induces oxidative stress and attenuates cellular base excision repair activity. Science Direct, Received 16 August 2018, Revised 11 April 2019, Accepted 19 May 2019, Available online 20 May 2019.
Deshpande SA, Meiselman M, Hice RH, Arensburger P, Rivera-Perez C, Kim DH, Croft RL, Noriega FG, Adams ME. (2019). Ecdysis triggering hormone receptors regulate male courtship behavior via antennal lobe interneurons in Drosophila. Gen Comp Endocrinol. 278:79-88. doi: 10.1016/j.ygcen.2018.12.003. Epub 2018 Dec 10. PubMed PMID: 30543770.
Moon JH, Manandhar P, Torabi H, Rohman MR, Mathivathanan L, Lee KH, Irle S. (2019). Phenyleneethynylene trimer-based rigid-flexible [2+2] macrocycles for nucleic acid labelling in live cells. Chem Commun (Camb). 55(42):5930-5933. doi: 10.1039/c9cc02162k. PubMed PMID: 31049491.
Shi K, Mathivathanan L, Boudalis AK, Turek P, Chakraborty I, Raptis RG. (2019). Nitrite Reduction by Trinuclear Copper Pyrazolate Complexes: An Example of a Catalytic, Synthetic Polynuclear NO Releasing System. Inorg Chem. doi: 10.1021/acs.inorgchem.9b00748. [Epub ahead of print] PubMed PMID: 31091082.
Rodriguez-Silva, M, Ashourian, KT, Smith, AD, and Chambers JW. (2019). Assessment of Mitochondrial Stress in Neurons: Proximity Ligation Assays to Detect Recruitment of Stress-Responsive Proteins to Mitochondria. Neuromethods: Cell Culture Techniques. DOI: 10.1007/978-1-4939-9228-7_6.
Dit Fouquea KJ, Fernandez-Lima F. (2019). Recent Advances in Biological Separations using Trapped Ion Mobility Spectrometry – Mass Spectrometry. TrAC Trends in Analytical Chemistry, Volume 116, Pages 308-315.
Cickovski T, Aguiar-Pulido V, Narasimhan G. (2019). MATria: a unified centrality algorithm. BMC Bioinformatics. 20(Suppl 11):278. doi:10.1186/s12859-019-2820-7. PubMed PMID: 31167635; PubMed Central PMCID: PMC6551236.
Pokhrel R, Bhattarai N, Baral P, Gerstman BS, Park JH, Handfield M, Chapagain PP. (2019). Molecular mechanisms of pore formation and membrane disruption by the antimicrobial lantibiotic peptide Mutacin 1140. Phys Chem Chem Phys. doi: 10.1039/c9cp01558b. [Epub ahead of print] PubMed PMID: 31147666.
Chatgilialoglu C, Ferreri C, Geacintov NE, Krokidis MG, Liu Y, Masi A, Shafirovich V, Terzidis MA, Tsegay PS. (2019). 5',8-Cyclopurine Lesions in DNA Damage: Chemical, Analytical, Biological, and Diagnostic Significance. Cells. 8(6). pii: E513. doi: 10.3390/cells8060513. Review. PubMed PMID: 31141888.
Leyva D, Tose LV, Porter J, Wolff J, Jaffé R, Fernandez-Lima F. (2019). Understanding the structural complexity of dissolved organic matter: isomeric diversity. Faraday Discuss. doi: 10.1039/c8fd00221e. [Epub ahead of print] PubMed PMID: 31134248.
Silverman JA, Mathivathanan L, Govor EV, Raptis RG, Kavallieratos K. (2019). Coordination polymers of Cd(II) and Pb(II) with croconate show remarkable differences in coordination patterns: a structural and spectroscopic study. Acta Crystallogr C Struct Chem. 75(Pt 7):935-940. doi: 10.1107/S2053229619007277. Epub 2019 Jun 14. PubMed PMID: 31271382.
Ioannou D, Tempest HG. (2019). Human Sperm Chromosomes: To Form Hairpin-Loops, Or Not to Form Hairpin-Loops, That Is the Question. Genes (Basel). 10(7). pii: E504. doi: 10.3390/genes10070504. PubMed PMID: 31277336
Jeanne Dit Fouque K, Moreno J, Fernandez-Lima F. (2019). Exploring the Conformational Space of Growth-Hormone-Releasing Hormone Analogues Using Dopant Assisted Trapped Ion Mobility Spectrometry-Mass Spectrometry. J Phys Chem B. doi: 10.1021/acs.jpcb.9b03777. [Epub ahead of print] PubMed PMID: 31299151.
Ahmed MS, Dutta RK, Manandhar P, Li X, Torabi H, Barrios A, Wang P, Chinnapaiyan S, Unwalla HJ, Moon JH. (2019). A guanylurea-functionalized conjugated polymer enables RNA interference in ex vivo human airway epithelium. Chem Commun (Camb). 55(54):7804-7807. doi: 10.1039/c9cc02856k. PubMed PMID: 31214678.
Ma T, Guo J, Chang S, Wang X, Zhou J, Liang F, He J. (2019). Modulating and probing the dynamic intermolecular interactions in plasmonic molecule-pair junctions. Phys Chem Chem Phys. doi: 10.1039/c9cp02030f. [Epub ahead of print] PubMed PMID: 31263809.
Nouzova M, Michalkova V, Ramirez CE, Fernandez-Lima F, Noriega FG. (2019). Inhibition of juvenile hormone synthesis in mosquitoes by the methylation inhibitor 3-deazaneplanocin A (DZNep). Insect Biochem Mol Biol. 103183. doi: 10.1016/j.ibmb.2019.103183. [Epub ahead of print] PubMed PMID: 31265905.
Gabelica V, Shvartsburg AA, Afonso C, Barran P, Benesch JLP, Bleiholder C, Bowers MT, Bilbao A, Bush MF, Campbell JL, Campuzano IDG, Causon T, Clowers BH, Creaser CS, De Pauw E, Far J, Fernandez-Lima F, Fjeldsted JC, Giles K, Groessl M, Hogan CJ Jr, Hann S, Kim HI, Kurulugama RT, May JC, McLean JA, Pagel K, Richardson K, Ridgeway ME, Rosu F, Sobott F, Thalassinos K, Valentine SJ, Wyttenbach T. (2019). Recommendations for reporting ion mobility Mass Spectrometry measurements. Mass Spectrom Rev. 38(3):291-320. doi: 10.1002/mas.21585. Epub 2019 Feb 1. Review. PubMed PMID: 30707468.
Wang W, Tse-Dinh YC. (2019). Recent Advances in Use of Topoisomerase Inhibitors in Combination Cancer Therapy. Curr Top Med Chem. 19(9):730-740. doi: 0.2174/1568026619666190401113350. Review. PubMed PMID: 30931861.
Nouzova M, Clifton ME, Noriega FG. (2019). Mosquito adaptations to hematophagia impact pathogen transmission. Curr Opin Insect Sci. 34:21-26. doi:10.1016/j.cois.2019.02.002. [Epub ahead of print] Review. PubMed PMID: 31247413.
Lai Y, Lei R, Ren Y, Liu Y. (2019). Methods to Study Trinucleotide Repeat Instability Induced by DNA Damage and Repair. Methods Mol Biol. 1999:87-101. doi: 10.1007/978-1-4939-9500-4_5. PubMed PMID: 31127571.
Castellanos A, Ramirez CE, Michalkova V, Nouzova M, Noriega FG, Fernández-Lima F. (2019). Three Dimensional Secondary Ion Mass Spectrometry Imaging (3D-SIMS) of Aedes aegypti ovarian follicles. J. Anal. At. Spectrom. DOI: 10.1039/c8ja00425k
Valdes C, Stebliankin V, Narasimhan G. (2019). Large scale microbiome profiling in the cloud. Bioinformatics. 35(14):i13-i22. doi:10.1093/bioinformatics/btz356. PubMed PMID: 31510682; PubMed Central PMCID: PMC6612844.
Christensen S, Camacho M, Sharmin Z, Momtaz AJMZ, Perez L, Navarro G, Triana J, Samarah H, Turelli M, Serbus LR. (2019). Quantitative methods for assessing local and bodywide contributions to Wolbachia titer in maternal germline cells of Drosophila. BMC Microbiol. 19(1):206. doi: 10.1186/s12866-019-1579-3. PubMed PMID: 31481018; PubMed Central PMCID: PMC6724367.
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Ranjan, N., Story, S., Fulcrand, G., Leng, F., Ahmad, M., King, A., Sur, S., Wang, W., Tse-Dinh, Y.C., Arya, D.P. (2017). Selective Inhibition of Escherichia coli RNA and DNA Topoisomerase I by Hoechst 33258 Derived Mono- and Bisbenzimidazoles. J Med Chem, doi: 10.1021/acs.jmedchem.7b00191
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Chambers, T.P., Santiesteban, L., Gomez, D., Chambers, J.W. (2017). Sab mediates mitochondrial dysfunction involved in imatinib mesylate-induced cardiotoxicity. Toxicology, 382:24-35. doi: 10.1016/j.tox.2017.03.006
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Yu, X., Zhang, M., Annamalai, T., Bansod, P., Narula, G., Tse-Dinh, Y.C., Sun, D. (2017). Synthesis, evaluation, and CoMFA study of fluoroquinophenoxazine derivatives as bacterial topoisomerase IA inhibitors. Eur J Med Chem, 125:515-527
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Benigni, P., Bravo, C., Quirke, J.M.E., DeBord, J.H., Mebel, A.M.,Fernandez-Lima, F. (2016). Analysis of geologically relevant metal-porphyrins using Trapped Ion Mobility Spectrometry-Mass Spectrometry and theoretical calculations. Energy & Fuels, doi 10.1021/acs.energyfuels.6b02388
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Vanbellingen, Q.P., Castellanos, A., Rodriguez-Silva, M., Paudel, I., Chambers, J.W., Fernandez-Lima, F. (2016). Analysis of Chemotherapeutic Drug Delivery at the Single Cell Level Using 3D-MSI-TOF-SIMS. J Am Soc Mass Spectrom, 27(12):2033-2040
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Tiwari, P.B., Chapagain, P.P., Banda, S., Darici, Y., Üren, A., Tse-Dinh, Y.C. (2016). Characterization of molecular interactions between E. coli RNA polymerase and topoisomerase I by molecular simulations. FEBS Lett,590(17):2844-51
Ramirez, C.E., Nouzova, M., Benigni, P., Quirke, J.M., Noriega, F.G., Fernandez-Lima, F. (2016). Fast, ultra-trace detection of juvenile hormone III from mosquitoes using mass spectrometry. Talanta, 159:371-8
Christensen, S., Pérez Dulzaides, R., Hedrick, V.E., Momtaz, A.J., Nakayasu, E.S., Paul, L.N., Serbus, L.R.(2016). Wolbachia endosymbionts modify Drosophila ovary protein levels in a context-dependent manner. Appl Environ Microbiol, doi: 10.1128/AEM.01255-16
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Benigni, P., DeBord J.D., Thompson, C.J., Gardinali, P., Fernandez-Lima, F. (2016). Increasing Polyaromatic Hydrocarbon (PAH) Molecular Coverage during Fossil Oil Analysis by Combining Gas Chromatography and Atmospheric-Pressure Laser Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR MS). Energy Fuels, 30(1):196-203
Aguiar-Pulido, V., Huang, W., Suarez-Ulloa, V., Cickovski, T., Mathee, K., Narasimhan, G. (2016). Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis. Evol Bioinform Online, 12(1):5-16
Lopez, S.M., Agoulnik, A.I., Zhang, M., Peterson, L.E., Suarez, E., Gandarillas, G.A., Frolov, A., Li, R., Rajapakshe, K., Coarfa, C., Ittmann, M.M., Weigel, N.L., Agoulnik, I.U. (2016). Nuclear Receptor Corepressor 1 Expression and Output Declines with Prostate Cancer Progression. Clin Cancer Res, doi:10.1158/1078-0432.CCR-15-1983
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Villalobos-Sambucaro, M.J., Diambra, L.A., Noriega, F.G., Ronderos, J.R. (2016). Allatostatin-C antagonizes the synergistic myostimulatory effect of allatotropin and serotonin in rhodnius prolixus (stal). Gen Comp Endocrinol, 233:1-7
Zhang, Y., Liu, J., Li, D., Dai, X., Yan, F., Conlan, X.A., Zhou, R., Barrow, C.J., He, J., Wang, X., Yang, W. (2016). Self-Assembled Core-Satellite Gold Nanoparticle Networks for Ultrasensitive Detection of Chiral Molecules by Recognition Tunneling Current. ACS Nano,10(5):5096-103.
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Banda, S., Tiwari, P.B., Darici, Y., Tse-Dinh, Y.C. (2016). Investigating direct interaction between Escherichia coli topoisomerase I and RecA. Gene,585(1):65-70.
Huang, W., Kazmierczak, K., Zhou, Z., Aguiar-Pulido, V., Narasimhan. G., Szczesna-Cordary, D. (2016). Gene expression patterns in transgenic mouse models of hypertrophic cardiomyopathy caused by mutations in myosin regulatory light chain. Arch Biochem Biophys, 601:121-32
Gonzalez, W.G., Ramos, V., Diaz, M., Garabedian, A., Molano-Arevalo, J.C., Fernandez-Lima, F., Miksovska, J. (2016). Characterization of the Photophysical, Thermodynamic, and Structural Properties of the Terbium(III)-DREAM Complex. Biochemistry, 55(12):1873-86.
Shan, Y., Panday, N., Myoung, Y., Twomey, M., Wang, X., Li, W., Celik, E., Moy, V., Wang, H., Moon, J.H., He, J. (2016). Scanning Ion Conductance Microscopic Study for Cellular Uptake of Cationic Conjugated Polymer Nanoparticles. Macromol Biosci,16(4):599-607.
Sandhaus, S., Taylor, R., Edwards, T., Huddleston, A., Wooten, Y., Venkatraman, R., Weber, R.T., González-Sarrías, A., Martin, P.M., Cagle, P., Tse-Dinh, Y.C., Beebe, S.J., Seeram, N., Holder, A.A. (2016). A novel copper(II) complex identified as a potent drug against colorectal and breast cancer cells and as a poison inhibitor for human topoisomerase IIα. Inorg Chem Commun,64:45-49.
Matthews, B.J., McBride, C.S., DeGennaro, M., Despo, O., Vosshall, L.B. (2016). The neurotranscriptome of the Aedes aegypti mosquito. BMC Genomics, 17:32. doi: 10.1186/s12864-015-2239-0.
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Ioannou, D., Miller, D., Griffin, D. K., Tempest H.G. (2016). Impact of sperm DNA chromatin in the clinic. J Assist Reprod Genet,33(2):157-66.
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Agoulnik, I.U., Agoulnik, A.I. (2015). Long-Lasting Consequences of Testosterone Exposure. Endocrinology, 156(10):3488-9.
Rodriguez Pino, M., Castillo, B., Kim, B., Kim, L.W. (2015). PP2A/B56 and GSK3/Ras suppress PKB activity during Dictyostelium chemotaxis. Mol Biol Cell, 26(24):4347-57.
Yang, J., Annamalai, T., Cheng, B., Banda, S., Tyagi, R., Tse-Dinh, Y.C. (2015). Antimicrobial Susceptibility and SOS-Dependent Increase in Mutation Frequency Are Impacted by Escherichia coli Topoisomerase I C-Terminal Point Mutation. Antimicrob Agents Chemother, 59(10):6195-202.
Chambers, T.P., Portalatin, G.M., Paudel, I, Robbins, C.J., Chambers, J.W. (2015). Sub-chronic administration of LY294002 sensitizes cervical cancer cells to chemotherapy by enhancing mitochondrial JNK signaling. Biochem Biophys Res Commun,463(4):538-44.
Mathee, K., Silver, L.L, Tatke, G. (2015). 70th Anniversary Collection for the Microbiology Society: Journal of Medical Microbiology. J Med Microbiol, 64(12):1457-61.
Tan, K., Cao, N., Cheng, B., Joachimiak, A., Tse-Dinh, Y.C. (2015). Insights from the Structure of Mycobacterium tuberculosis Topoisomerase I with a Novel Protein Fold. J Mol Biol, 428(1):182-933.
Mustafi, S., Veisaga, M.L., López L.A, Barbieri, M.A. (2015). A Novel Insight into Dehydroleucodine Mediated Attenuation of Pseudomonas aeruginosa Virulence Mechanism. Biomed Res Int., 216097. doi: 10.1155/2015/216097.
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